Variant report

Variant	rs1557602
Chromosome Location	chr9:118051852-118051853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10817738	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs10982625	1.00[CHB][hapmap]
rs1100324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11496558	1.00[CHB][hapmap]
rs11790089	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1335337	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1557604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2225749	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs4526430	0.89[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118042800-118052800	Weak transcription	Gastric	stomach
2	chr9:118047600-118052800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:118048600-118054000	Weak transcription	HSMM	muscle
4	chr9:118049000-118053800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:118049200-118052200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:118051800-118052000	Enhancers	Fetal Lung	lung
7	chr9:118051800-118053000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:118051800-118055200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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