Variant report

Variant	rs1335337
Chromosome Location	chr9:118013483-118013484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10817738	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10982625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10982643	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100324	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11496558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11790089	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335329	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1557602	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1557604	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2027156	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225749	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4526430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578010	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118011800-118014200	Enhancers	Fetal Lung	lung
2	chr9:118012000-118013600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:118012000-118013600	Enhancers	NHLF	lung
4	chr9:118012000-118014000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:118012000-118014000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:118012000-118014200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:118012000-118014200	Enhancers	Fetal Muscle Leg	muscle
8	chr9:118012000-118014200	Enhancers	HMEC	breast
9	chr9:118012000-118014200	Enhancers	HSMM	muscle
10	chr9:118012000-118014200	Enhancers	HSMMtube	muscle
11	chr9:118012000-118014400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:118012000-118014600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:118012000-118014600	Enhancers	NHEK	skin
14	chr9:118012200-118013800	Enhancers	Fetal Stomach	stomach
15	chr9:118012200-118013800	Enhancers	NH-A	brain
16	chr9:118012200-118014000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:118012200-118014000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:118012200-118014000	Enhancers	NHDF-Ad	bronchial
19	chr9:118012200-118014000	Enhancers	Osteobl	bone
20	chr9:118012200-118014200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:118012400-118013800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:118012400-118013800	Enhancers	Colon Smooth Muscle	Colon
23	chr9:118012400-118014200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:118012600-118013600	Weak transcription	Fetal Kidney	kidney
25	chr9:118012600-118014000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr9:118013200-118015000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:118013400-118016600	Weak transcription	Rectal Smooth Muscle	rectum

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