Variant report

Variant	rs11003642
Chromosome Location	chr10:55251227-55251228
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10762984	0.83[EUR][1000 genomes]
rs10762985	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10762986	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10762987	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10762988	0.84[ASN][1000 genomes]
rs10825038	0.88[ASN][1000 genomes]
rs10825043	0.82[ASN][1000 genomes]
rs10825052	0.81[ASN][1000 genomes]
rs11003641	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11003643	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12355834	0.83[EUR][1000 genomes]
rs12766128	0.84[AFR][1000 genomes]
rs12766620	0.89[ASN][1000 genomes]
rs12767051	0.82[AFR][1000 genomes]
rs12768602	0.83[AFR][1000 genomes]
rs12771423	0.84[AFR][1000 genomes]
rs12772990	0.82[AFR][1000 genomes]
rs12775493	0.88[ASN][1000 genomes]
rs12779337	0.88[AFR][1000 genomes]
rs12784700	0.90[AFR][1000 genomes]
rs34135641	0.82[AFR][1000 genomes]
rs34284453	0.83[AFR][1000 genomes]
rs34345813	0.84[AFR][1000 genomes]
rs34373500	0.82[AFR][1000 genomes]
rs34517473	0.83[AFR][1000 genomes]
rs34535347	0.92[AFR][1000 genomes]
rs34894185	0.83[AFR][1000 genomes]
rs35160613	0.85[AFR][1000 genomes]
rs351828	0.86[ASN][1000 genomes]
rs35635224	0.82[AFR][1000 genomes]
rs58389486	0.83[AFR][1000 genomes]
rs59911333	0.83[AFR][1000 genomes]
rs66715040	0.83[AFR][1000 genomes]
rs67606828	0.81[AFR][1000 genomes]
rs67746475	0.83[AFR][1000 genomes]
rs67805701	0.81[AFR][1000 genomes]
rs71502020	0.83[AFR][1000 genomes]
rs73347344	0.94[AFR][1000 genomes]
rs73347346	0.94[AFR][1000 genomes]
rs73347349	0.94[AFR][1000 genomes]
rs73347350	0.94[AFR][1000 genomes]
rs73347353	0.94[AFR][1000 genomes]
rs73347357	0.86[AFR][1000 genomes]
rs73347374	0.83[AFR][1000 genomes]
rs73356752	0.83[AFR][1000 genomes]
rs7894670	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898248	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913433	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7913699	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7914281	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914402	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923862	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7923875	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7924026	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7924289	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2755889	chr10:55150173-55278481	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv523436	chr10:55198707-55252076	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv2762868	chr10:55235860-55252387	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55247600-55251600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:55247600-55259400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:55247600-55259400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:55248600-55251400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:55248600-55251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:55249600-55251800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:55249800-55251400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:55249800-55251400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:55249800-55251800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:55249800-55251800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:55250000-55251400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:55250000-55259200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:55250200-55251400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:55250400-55251600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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