Variant report

Variant	rs12766620
Chromosome Location	chr10:55259298-55259299
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10762987	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10762988	0.94[ASN][1000 genomes]
rs10825038	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10825043	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10825052	0.89[ASN][1000 genomes]
rs10825055	0.81[ASN][1000 genomes]
rs10825063	0.84[ASN][1000 genomes]
rs11003641	0.88[ASN][1000 genomes]
rs11003642	0.89[ASN][1000 genomes]
rs11003643	0.88[ASN][1000 genomes]
rs11003671	0.85[ASN][1000 genomes]
rs12775493	0.99[ASN][1000 genomes]
rs16937501	0.83[ASN][1000 genomes]
rs2171395	0.85[ASN][1000 genomes]
rs351828	0.96[ASN][1000 genomes]
rs35367158	0.83[ASN][1000 genomes]
rs35899588	0.85[ASN][1000 genomes]
rs417633	0.84[ASN][1000 genomes]
rs7894670	0.90[ASN][1000 genomes]
rs7896942	0.82[ASN][1000 genomes]
rs7898248	0.90[ASN][1000 genomes]
rs7913699	0.89[ASN][1000 genomes]
rs7914118	0.90[ASN][1000 genomes]
rs7914281	0.89[ASN][1000 genomes]
rs7914402	0.88[ASN][1000 genomes]
rs7924289	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2755889	chr10:55150173-55278481	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55247600-55259400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:55247600-55259400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:55259000-55259800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:55259000-55261000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr10:55259200-55260000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:55259200-55261000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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