Variant report

Variant	rs11003863
Chromosome Location	chr10:55568972-55568973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10763009	0.91[JPT][hapmap]
rs10825114	0.81[MEX][hapmap]
rs10825120	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs10825130	0.85[GIH][hapmap]
rs11003855	0.84[EUR][1000 genomes]
rs11003860	0.84[EUR][1000 genomes]
rs11003861	0.84[EUR][1000 genomes]
rs11003879	0.83[CEU][hapmap]
rs12263108	0.94[CEU][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs12268247	0.81[CEU][hapmap]
rs1361806	0.84[EUR][1000 genomes]
rs1900443	0.83[CEU][hapmap];0.92[GIH][hapmap]
rs4519000	0.88[CEU][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs7358121	0.83[CEU][hapmap]
rs7478212	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs7901828	0.83[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]
rs7914433	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv895410	chr10:55385962-55577022	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv428556	chr10:55413202-55586930	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1051273	chr10:55551887-55577543	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1052057	chr10:55551887-55581651	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1042430	chr10:55558890-55581651	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55568400-55569000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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