Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10825334	0.93[JPT][hapmap]
rs10825335	0.87[CHB][hapmap];0.87[AMR][1000 genomes]
rs10825336	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs10825338	0.81[CHB][hapmap]
rs11004318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004326	0.82[CHB][hapmap];0.96[AMR][1000 genomes]
rs11004328	0.82[CHB][hapmap];0.91[AMR][1000 genomes]
rs11004329	0.87[AMR][1000 genomes]
rs11004332	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs11004333	0.82[CHB][hapmap]
rs1157587	0.87[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes]
rs12219968	0.89[JPT][hapmap]
rs12220423	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs12415777	0.82[CHB][hapmap]
rs12570055	0.88[JPT][hapmap]
rs12570763	0.82[CHB][hapmap]
rs1342309	0.82[CHB][hapmap]
rs1578671	1.00[JPT][hapmap]
rs16906167	0.87[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes]
rs2104891	0.81[CHB][hapmap];0.96[AMR][1000 genomes]
rs6481098	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6481099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7070972	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv895440	chr10:56212367-56286068	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv895441	chr10:56212367-56286068	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895442	chr10:56212367-56295820	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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