Variant report

Variant	rs6481099
Chromosome Location	chr10:56218932-56218933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10825334	0.93[JPT][hapmap]
rs10825335	0.93[MEX][hapmap];0.86[AMR][1000 genomes]
rs10825336	0.93[MEX][hapmap]
rs11004318	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004319	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004321	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004329	0.86[AMR][1000 genomes]
rs1157587	0.84[AMR][1000 genomes]
rs12219968	0.88[JPT][hapmap]
rs12415777	0.86[CEU][hapmap]
rs12570055	0.88[JPT][hapmap]
rs12570763	1.00[MEX][hapmap]
rs1342309	0.91[GIH][hapmap];0.88[MEX][hapmap]
rs1418366	0.86[MEX][hapmap]
rs1578671	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6481098	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7912610	0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv895440	chr10:56212367-56286068	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv895441	chr10:56212367-56286068	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895442	chr10:56212367-56295820	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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