Variant report
| Variant | rs12219968 |
|---|---|
| Chromosome Location | chr10:56224585-56224586 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10825334 | 0.94[JPT][hapmap] |
| rs10825335 | 0.90[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs10825336 | 0.80[CEU][hapmap];0.94[CHB][hapmap] |
| rs10825338 | 0.89[CEU][hapmap];0.88[CHB][hapmap] |
| rs11004318 | 0.81[CEU][hapmap];0.89[JPT][hapmap] |
| rs11004319 | 0.81[CEU][hapmap];0.89[JPT][hapmap] |
| rs11004321 | 0.89[JPT][hapmap] |
| rs11004326 | 0.90[CEU][hapmap];0.89[CHB][hapmap];0.93[AMR][1000 genomes] |
| rs11004328 | 0.90[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes] |
| rs11004329 | 0.90[CEU][hapmap];0.84[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11004332 | 0.80[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap] |
| rs11004333 | 0.89[CEU][hapmap];0.89[CHB][hapmap] |
| rs1157587 | 0.80[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12220423 | 0.89[CHB][hapmap] |
| rs12268378 | 0.88[CHB][hapmap] |
| rs12415777 | 0.95[CHB][hapmap] |
| rs12570055 | 0.88[JPT][hapmap] |
| rs12570763 | 0.81[CEU][hapmap];0.89[CHB][hapmap] |
| rs1342309 | 0.89[CHB][hapmap] |
| rs1578671 | 0.92[JPT][hapmap] |
| rs16906167 | 0.80[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes] |
| rs2104891 | 0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6481098 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6481099 | 0.88[JPT][hapmap] |
| rs7070972 | 0.89[CHB][hapmap] |
| rs7912610 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044020 | chr10:56038546-56224736 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv540634 | chr10:56038546-56224736 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052386 | chr10:56075990-56273476 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv895440 | chr10:56212367-56286068 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv895441 | chr10:56212367-56286068 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv895442 | chr10:56212367-56295820 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
