Variant report

Variant	rs11012726
Chromosome Location	chr10:21797272-21797273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21794668..21800963-chr10:21813670..21817700,8	MCF-7	breast:
2	chr10:21796721..21798891-chr10:22659215..22661433,2	K562	blood:
3	chr10:21795681..21797336-chr10:21797733..21799271,2	MCF-7	breast:
4	chr10:21794929..21798874-chr10:21803033..21806226,5	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10828250	0.83[ASN][1000 genomes]
rs10828252	0.83[ASN][1000 genomes]
rs10828256	0.83[ASN][1000 genomes]
rs11012737	0.83[ASN][1000 genomes]
rs11592565	0.83[ASN][1000 genomes]
rs12356674	0.83[ASN][1000 genomes]
rs12357321	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12767024	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12769128	0.83[ASN][1000 genomes]
rs12770228	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12779865	0.83[ASN][1000 genomes]
rs12783517	0.83[ASN][1000 genomes]
rs12784277	0.83[ASN][1000 genomes]
rs34853448	0.82[AMR][1000 genomes]
rs35587371	0.83[ASN][1000 genomes]
rs61850044	0.83[ASN][1000 genomes]
rs7084454	0.83[ASN][1000 genomes]
rs946711	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv527055	chr10:21764019-21822856	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv825290	chr10:21777857-21830878	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
8	nsv894936	chr10:21781589-21827796	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv550200	chr10:21782842-21824727	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv894937	chr10:21782842-21827796	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
11	nsv517469	chr10:21783634-21822856	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
12	nsv894938	chr10:21784899-21827796	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
13	nsv894939	chr10:21789406-21830104	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv825291	chr10:21792100-21830946	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv894940	chr10:21796081-21823525	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv550201	chr10:21796081-21824727	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv894941	chr10:21796081-21827796	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11012726	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21789800-21799800	Weak transcription	Lung	lung
2	chr10:21790200-21797800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:21790400-21797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:21794600-21799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:21794800-21797800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:21795000-21799000	Weak transcription	Left Ventricle	heart
7	chr10:21795200-21797400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:21795200-21798400	Bivalent Enhancer	Fetal Thymus	thymus
9	chr10:21795200-21799000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:21795400-21798600	Weak transcription	Fetal Intestine Small	intestine
11	chr10:21795600-21798200	Enhancers	Liver	Liver
12	chr10:21795600-21799000	Enhancers	Placenta	Placenta
13	chr10:21795800-21799600	Enhancers	HepG2	liver
14	chr10:21795800-21799800	Enhancers	Fetal Heart	heart
15	chr10:21795800-21799800	Weak transcription	A549	lung
16	chr10:21796000-21798800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:21796000-21798800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:21796200-21797400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:21796200-21797400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr10:21796200-21797400	Enhancers	Brain Germinal Matrix	brain
21	chr10:21796400-21801000	Weak transcription	K562	blood
22	chr10:21796600-21799000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:21796600-21799000	Enhancers	Fetal Lung	lung
24	chr10:21796800-21797800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr10:21796800-21798400	Weak transcription	Right Atrium	heart
26	chr10:21796800-21800000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr10:21796800-21801000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:21797000-21797400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr10:21797000-21797600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr10:21797000-21798000	Weak transcription	Fetal Kidney	kidney
31	chr10:21797000-21798400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:21797000-21798400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:21797000-21798400	Bivalent Enhancer	Fetal Brain Male	brain
34	chr10:21797000-21798600	Bivalent Enhancer	Fetal Stomach	stomach
35	chr10:21797000-21800000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:21797200-21797400	Flanking Active TSS	Fetal Brain Female	brain
37	chr10:21797200-21797400	Flanking Active TSS	Fetal Muscle Trunk	muscle
38	chr10:21797200-21797600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr10:21797200-21797600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr10:21797200-21797600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:21797200-21797800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:21797200-21797800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:21797200-21798200	Active TSS	H1 Cell Line	embryonic stem cell
44	chr10:21797200-21798800	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr10:21797200-21799800	Active TSS	H9 Cell Line	embryonic stem cell
46	chr10:21797200-21800200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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