Variant report

Variant	rs11012843
Chromosome Location	chr10:18451380-18451381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18440418..18442288-chr10:18448031..18451396,3	K562	blood:
2	chr10:18450176..18452419-chr10:18453993..18456131,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11595814	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11598236	0.95[GIH][hapmap]
rs12569914	0.95[GIH][hapmap]
rs17605553	0.95[GIH][hapmap]
rs1779244	0.89[GIH][hapmap]
rs2150694	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11012843	C10orf113	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18448200-18453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:18448400-18451600	Weak transcription	Pancreas	Pancrea
11	chr10:18448400-18452800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:18448400-18454000	Weak transcription	Left Ventricle	heart
13	chr10:18448400-18454200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
15	chr10:18448600-18452400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:18448600-18452400	Weak transcription	Ovary	ovary
17	chr10:18448600-18452600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:18448600-18452800	Weak transcription	Osteobl	bone
19	chr10:18448600-18454200	Weak transcription	Aorta	Aorta
20	chr10:18448800-18452000	Weak transcription	Fetal Stomach	stomach
21	chr10:18448800-18452400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:18448800-18452600	Weak transcription	NHLF	lung
23	chr10:18448800-18453200	Weak transcription	HSMM	muscle
24	chr10:18448800-18453800	Weak transcription	Fetal Brain Female	brain
25	chr10:18449000-18452600	Weak transcription	Fetal Heart	heart
26	chr10:18449000-18452800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:18449000-18453600	Weak transcription	Fetal Brain Male	brain
28	chr10:18449800-18452600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:18449800-18452800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:18450000-18452400	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:18450000-18452400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:18450000-18452600	Weak transcription	NHDF-Ad	bronchial
33	chr10:18450000-18453400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr10:18450200-18452600	Weak transcription	Hela-S3	cervix
35	chr10:18450400-18451400	Weak transcription	Fetal Lung	lung
36	chr10:18450800-18452000	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr10:18451200-18452400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:18451200-18452800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links