Variant report

Variant	rs1779244
Chromosome Location	chr10:18477625-18477626
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11012843	0.89[GIH][hapmap]
rs11591660	0.86[CEU][hapmap]
rs11598236	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12569914	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12766683	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12776808	0.81[EUR][1000 genomes]
rs1757246	0.81[EUR][1000 genomes]
rs17605553	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17662228	1.00[CEU][hapmap]
rs1779241	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2482101	0.97[EUR][1000 genomes]
rs2482103	1.00[CEU][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489211	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs34074414	0.84[EUR][1000 genomes]
rs34295748	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35667846	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
5	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:18469800-18479200	Weak transcription	Left Ventricle	heart
9	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
11	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
12	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
13	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:18474800-18478600	Weak transcription	Fetal Heart	heart
15	chr10:18475000-18481000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:18475200-18479000	Weak transcription	Pancreas	Pancrea
17	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:18475400-18479800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:18477400-18478800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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