Variant report

Variant	rs17662228
Chromosome Location	chr10:18440398-18440399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11591227	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591660	0.86[CEU][hapmap];0.97[EUR][1000 genomes]
rs11592100	1.00[JPT][hapmap]
rs11592688	0.81[EUR][1000 genomes]
rs11598236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12569914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs12571593	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572321	0.86[ASN][1000 genomes]
rs12764271	0.89[EUR][1000 genomes]
rs12765240	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766683	1.00[CEU][hapmap]
rs12779075	0.81[EUR][1000 genomes]
rs17605553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs1779241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs1779244	1.00[CEU][hapmap]
rs2482103	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2489211	1.00[CEU][hapmap]
rs34295748	0.88[AMR][1000 genomes]
rs34418804	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34537345	0.81[EUR][1000 genomes]
rs35410995	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35769984	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36045774	0.86[ASN][1000 genomes]
rs71497233	0.81[EUR][1000 genomes]
rs71497235	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71497236	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18430600-18446400	Weak transcription	Brain Angular Gyrus	brain
2	chr10:18430800-18442400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:18431000-18440600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18431200-18440600	Weak transcription	Aorta	Aorta
5	chr10:18431200-18447800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:18431200-18447800	Weak transcription	Fetal Intestine Large	intestine
7	chr10:18431400-18440600	Weak transcription	Ovary	ovary
8	chr10:18431400-18441200	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:18432600-18446800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18432600-18448000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:18434200-18444000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:18434200-18448000	Weak transcription	Pancreas	Pancrea
14	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:18435200-18444000	Weak transcription	Fetal Heart	heart
17	chr10:18435400-18443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:18436000-18448200	Weak transcription	Left Ventricle	heart
19	chr10:18437800-18440600	Weak transcription	Fetal Stomach	stomach
20	chr10:18439200-18440400	Weak transcription	Fetal Lung	lung
21	chr10:18439800-18440600	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:18440000-18441600	Enhancers	Fetal Brain Male	brain
23	chr10:18440200-18440800	Strong transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:18440200-18441000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:18440200-18441600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:18440200-18441600	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr10:18440200-18441800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:18440200-18444600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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