Variant report

Variant	rs12766683
Chromosome Location	chr10:18463166-18463167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11598236	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12569914	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12776808	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277757	1.00[CEU][hapmap]
rs1277766	1.00[CEU][hapmap]
rs1277769	1.00[CEU][hapmap]
rs1757217	1.00[CEU][hapmap]
rs17605553	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17662228	1.00[CEU][hapmap]
rs1779241	1.00[CEU][hapmap]
rs1779244	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2482099	1.00[CEU][hapmap]
rs2482101	0.83[EUR][1000 genomes]
rs2482103	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2489211	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs34074414	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34295748	0.92[EUR][1000 genomes]
rs34537345	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35667846	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71491145	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522505	chr10:18453209-18465479	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
5	chr10:18452800-18466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18453800-18465000	Weak transcription	Fetal Heart	heart
7	chr10:18454600-18467000	Weak transcription	Fetal Lung	lung
8	chr10:18454600-18467200	Weak transcription	Fetal Stomach	stomach
9	chr10:18454600-18467600	Weak transcription	Aorta	Aorta
10	chr10:18454600-18469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:18454800-18465800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:18454800-18466800	Weak transcription	Brain Anterior Caudate	brain
13	chr10:18456800-18466800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:18457600-18467600	Weak transcription	Ovary	ovary
15	chr10:18459000-18466600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:18459200-18467600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:18459200-18467600	Weak transcription	Fetal Intestine Small	intestine
18	chr10:18459200-18467600	Weak transcription	Left Ventricle	heart
19	chr10:18460200-18467000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:18460800-18468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:18461600-18467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:18463000-18467600	Weak transcription	Colon Smooth Muscle	Colon

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