Variant report

Variant	rs2482099
Chromosome Location	chr10:18484261-18484262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11013025	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1125417	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12260334	0.80[YRI][hapmap]
rs12766683	1.00[CEU][hapmap]
rs1277725	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1277726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1277728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277730	1.00[CEU][hapmap]
rs1277757	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1277758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277759	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277760	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277761	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1277762	0.83[GIH][hapmap]
rs1277764	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1277765	0.81[GIH][hapmap]
rs1277766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277768	0.81[GIH][hapmap]
rs1277769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1300003	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539679	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs1573221	0.82[CEU][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1573222	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs1757217	0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1779241	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
7	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:18480000-18484400	Weak transcription	Left Ventricle	heart
9	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:18483000-18485400	Enhancers	Fetal Stomach	stomach
11	chr10:18483400-18484800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:18483400-18485000	Enhancers	NHLF	lung
13	chr10:18483600-18484800	Enhancers	Fetal Lung	lung
14	chr10:18483600-18484800	Enhancers	Osteobl	bone
15	chr10:18483600-18487800	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:18483800-18484600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:18483800-18484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:18483800-18485000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:18484000-18484800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:18484000-18484800	Enhancers	Ovary	ovary
21	chr10:18484000-18484800	Enhancers	NH-A	brain
22	chr10:18484000-18484800	Enhancers	NHDF-Ad	bronchial
23	chr10:18484000-18485000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:18484000-18486600	Enhancers	Fetal Heart	heart
25	chr10:18484200-18484400	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr10:18484200-18484600	Enhancers	Right Ventricle	heart
27	chr10:18484200-18484600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:18484200-18484800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:18484200-18484800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:18484200-18484800	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr10:18484200-18485000	Enhancers	Cortex derived primary cultured neurospheres	brain

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