Variant report

Variant	rs1277726
Chromosome Location	chr10:18486612-18486613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1125417	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1277725	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1277727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1277728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277730	1.00[CEU][hapmap]
rs1277757	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1277758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277759	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277760	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277761	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1277764	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1277766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1300003	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1539679	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs1573221	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs1573222	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs1757217	0.85[EUR][1000 genomes]
rs2482099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
2	esv3321902	chr10:18486496-18487844	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:18483600-18487800	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:18484800-18486800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:18484800-18486800	Enhancers	Colon Smooth Muscle	Colon
7	chr10:18484800-18487600	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:18485800-18486800	Enhancers	Fetal Stomach	stomach
10	chr10:18485800-18486800	Enhancers	Ovary	ovary
11	chr10:18486000-18486800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:18486000-18486800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:18486000-18486800	Enhancers	Fetal Intestine Small	intestine
14	chr10:18486000-18486800	Enhancers	Left Ventricle	heart
15	chr10:18486200-18486800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:18486200-18487000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:18486600-18486800	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr10:18486600-18486800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:18486600-18487200	Weak transcription	Right Ventricle	heart
20	chr10:18486600-18487400	Enhancers	Right Atrium	heart
21	chr10:18486600-18491000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:18486600-18491000	Weak transcription	Fetal Heart	heart
23	chr10:18486600-18491200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:18486600-18491600	Weak transcription	Aorta	Aorta
25	chr10:18486600-18491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine

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