Variant report

Variant	rs1277727
Chromosome Location	chr10:18485562-18485563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1125417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277725	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1277726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1277728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1277730	1.00[CEU][hapmap]
rs1277757	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277759	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277760	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277761	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1277764	0.96[EUR][1000 genomes]
rs1277766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1300003	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539679	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs1573221	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs1573222	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs1757217	0.82[EUR][1000 genomes]
rs2482099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:18483600-18487800	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:18484000-18486600	Enhancers	Fetal Heart	heart
10	chr10:18484600-18486000	Weak transcription	Right Ventricle	heart
11	chr10:18484800-18485800	Weak transcription	Ovary	ovary
12	chr10:18484800-18486000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:18484800-18486000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:18484800-18486000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:18484800-18486000	Weak transcription	Left Ventricle	heart
16	chr10:18484800-18486000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:18484800-18486200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:18484800-18486600	Weak transcription	Right Atrium	heart
19	chr10:18484800-18486800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:18484800-18486800	Enhancers	Colon Smooth Muscle	Colon
21	chr10:18484800-18487600	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:18485000-18486000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:18485000-18486000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:18485200-18485600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:18485400-18485600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:18485400-18485800	Weak transcription	Fetal Stomach	stomach

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