Variant report

Variant	rs1277758
Chromosome Location	chr10:18490930-18490931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1125417	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1277725	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277726	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277727	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277728	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1277730	1.00[CEU][hapmap]
rs1277757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277759	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277760	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277761	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277764	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1277766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1300003	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1539679	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs1573221	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs1573222	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs1757217	0.82[EUR][1000 genomes]
rs2482099	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:18486600-18491000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:18486600-18491000	Weak transcription	Fetal Heart	heart
6	chr10:18486600-18491200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18486600-18491600	Weak transcription	Aorta	Aorta
8	chr10:18486600-18491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine
10	chr10:18486800-18491200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:18486800-18491200	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:18486800-18492000	Weak transcription	Left Ventricle	heart
13	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
14	chr10:18487600-18491200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:18487800-18491000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:18490200-18491200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:18490600-18494200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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