Variant report

Variant	rs1277757
Chromosome Location	chr10:18491956-18491957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1125417	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766683	1.00[CEU][hapmap]
rs1277725	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1277726	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1277727	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277728	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1277730	1.00[CEU][hapmap]
rs1277758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277760	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277761	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277762	0.97[GIH][hapmap]
rs1277764	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1277765	0.94[GIH][hapmap]
rs1277766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1277768	0.94[GIH][hapmap]
rs1277769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1300003	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1539679	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs1573221	0.82[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs1573222	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs1757217	0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs1779241	0.82[CEU][hapmap]
rs2482099	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18486800-18492000	Weak transcription	Left Ventricle	heart
4	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
5	chr10:18490600-18494200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:18491000-18492000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18491000-18493200	Enhancers	Fetal Heart	heart
8	chr10:18491000-18494800	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:18491200-18492600	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:18491200-18493000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:18491200-18493800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:18491200-18494400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:18491600-18492000	Enhancers	Aorta	Aorta
14	chr10:18491600-18492200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:18491600-18492200	Enhancers	Fetal Brain Female	brain
16	chr10:18491600-18492200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr10:18491600-18492800	Flanking Active TSS	Fetal Brain Male	brain
18	chr10:18491600-18493200	Enhancers	Brain Anterior Caudate	brain
19	chr10:18491600-18494200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr10:18491800-18492200	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr10:18491800-18492400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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