Variant report

Variant	rs1277762
Chromosome Location	chr10:18494666-18494667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1277757	0.97[GIH][hapmap]
rs1277765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277766	0.86[GIH][hapmap]
rs1277768	1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1277769	0.97[GIH][hapmap]
rs1573221	0.97[GIH][hapmap]
rs2482099	0.83[GIH][hapmap]
rs2489207	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2489208	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
3	chr10:18491000-18494800	Enhancers	Rectal Smooth Muscle	rectum
4	chr10:18493200-18497800	Weak transcription	Fetal Heart	heart
5	chr10:18493600-18495800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:18493800-18497600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:18493800-18503800	Weak transcription	Fetal Brain Male	brain
8	chr10:18494000-18495200	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:18494000-18497600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:18494200-18497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:18494200-18499600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18494400-18494800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:18494400-18503600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:18494600-18495000	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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