Variant report

Variant	rs1277769
Chromosome Location	chr10:18499794-18499795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1125417	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12766683	1.00[CEU][hapmap]
rs1277725	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1277726	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277727	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1277728	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1277730	1.00[CEU][hapmap]
rs1277757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1277758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1277759	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1277760	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1277761	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1277762	0.97[GIH][hapmap]
rs1277764	0.95[EUR][1000 genomes]
rs1277765	1.00[GIH][hapmap]
rs1277766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1277768	1.00[GIH][hapmap]
rs1300003	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1539679	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs1573221	0.82[CEU][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1573222	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs1757217	0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1779241	0.82[CEU][hapmap]
rs2482099	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
3	chr10:18493800-18503800	Weak transcription	Fetal Brain Male	brain
4	chr10:18494400-18503600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:18495200-18501400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18497800-18503000	Enhancers	Fetal Heart	heart
7	chr10:18498400-18499800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:18498600-18500000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:18498600-18502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:18499000-18500200	Enhancers	Fetal Intestine Small	intestine
11	chr10:18499200-18500800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:18499200-18501400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
14	chr10:18499600-18500600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:18499600-18500800	Enhancers	Pancreatic Islets	Pancreatic Islet

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