Variant report

Variant	rs1277725
Chromosome Location	chr10:18486857-18486858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1125417	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1277726	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1277727	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1277728	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1277757	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1277758	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277759	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277760	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277761	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1277764	0.92[EUR][1000 genomes]
rs1277766	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1277769	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1300003	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1539679	0.90[EUR][1000 genomes]
rs1573221	0.90[EUR][1000 genomes]
rs1573222	0.90[EUR][1000 genomes]
rs2482099	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
2	esv3321902	chr10:18486496-18487844	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:18483600-18487800	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:18484800-18487600	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:18486200-18487000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:18486600-18487200	Weak transcription	Right Ventricle	heart
9	chr10:18486600-18487400	Enhancers	Right Atrium	heart
10	chr10:18486600-18491000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:18486600-18491000	Weak transcription	Fetal Heart	heart
12	chr10:18486600-18491200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:18486600-18491600	Weak transcription	Aorta	Aorta
14	chr10:18486600-18491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine
16	chr10:18486800-18491200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:18486800-18491200	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:18486800-18492000	Weak transcription	Left Ventricle	heart
19	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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