Variant report

Variant	rs1539679
Chromosome Location	chr10:18502370-18502371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1125417	0.94[EUR][1000 genomes]
rs1277725	0.90[EUR][1000 genomes]
rs1277726	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs1277727	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs1277728	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs1277730	0.85[CEU][hapmap]
rs1277757	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs1277758	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs1277759	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs1277760	0.94[EUR][1000 genomes]
rs1277764	0.91[EUR][1000 genomes]
rs1277766	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs1277769	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs1300003	0.90[EUR][1000 genomes]
rs1573221	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1573222	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2482099	0.82[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3469840	chr10:18501971-18504819	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3346215	chr10:18502321-18504569	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18493800-18503800	Weak transcription	Fetal Brain Male	brain
3	chr10:18494400-18503600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:18497800-18503000	Enhancers	Fetal Heart	heart
5	chr10:18498600-18502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
7	chr10:18500000-18504800	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:18500200-18506000	Weak transcription	Right Atrium	heart
9	chr10:18500400-18503600	Enhancers	Colon Smooth Muscle	Colon
10	chr10:18501200-18503400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:18501400-18502600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:18501400-18503000	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:18501800-18502400	Enhancers	Pancreas	Pancrea
14	chr10:18502000-18502400	Enhancers	Fetal Stomach	stomach
15	chr10:18502000-18504400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:18502200-18502400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:18502200-18502400	Enhancers	Right Ventricle	heart
18	chr10:18502200-18502800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr10:18502200-18503000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:18502200-18503600	Weak transcription	Brain Angular Gyrus	brain
21	chr10:18502200-18503600	Weak transcription	Left Ventricle	heart
22	chr10:18502200-18503600	Weak transcription	Ovary	ovary

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