Variant report

Variant	rs2482103
Chromosome Location	chr10:18479948-18479949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11591660	0.86[CEU][hapmap]
rs11592100	0.90[CHD][hapmap]
rs11598236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[ASN][1000 genomes]
rs12569914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12766683	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1757246	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17605553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17662228	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1779241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779244	1.00[CEU][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1892009	0.91[AMR][1000 genomes]
rs2482101	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2489211	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34074414	0.82[EUR][1000 genomes]
rs34295748	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35118097	0.92[ASN][1000 genomes]
rs35410995	0.80[ASN][1000 genomes]
rs71497236	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
9	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
10	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
11	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:18475000-18481000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:18478600-18480400	Enhancers	Fetal Heart	heart
15	chr10:18479400-18483000	Weak transcription	Ovary	ovary
16	chr10:18479400-18484200	Weak transcription	Right Ventricle	heart
17	chr10:18479600-18480000	Enhancers	Left Ventricle	heart
18	chr10:18479800-18483200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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