Variant report

Variant	rs12569914
Chromosome Location	chr10:18469522-18469523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11012843	0.95[GIH][hapmap]
rs11591660	0.86[CEU][hapmap]
rs11598236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571593	0.88[AMR][1000 genomes]
rs12765240	0.88[AMR][1000 genomes]
rs12766683	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12776808	0.97[EUR][1000 genomes]
rs17605553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17662228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs1779241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779244	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2482101	0.82[EUR][1000 genomes]
rs2482103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489211	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs34074414	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34295748	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34537345	0.93[EUR][1000 genomes]
rs35118097	0.94[ASN][1000 genomes]
rs35410995	0.82[ASN][1000 genomes]
rs35667846	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs35769984	0.82[AMR][1000 genomes]
rs71491145	0.86[EUR][1000 genomes]
rs71497236	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12569914	C10orf113	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18466800-18469600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr10:18467200-18470200	Enhancers	Fetal Stomach	stomach
3	chr10:18467600-18469600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:18467600-18469600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:18467600-18469600	Enhancers	NHLF	lung
6	chr10:18467600-18469800	Enhancers	Fetal Brain Male	brain
7	chr10:18467600-18471200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:18467600-18471200	Enhancers	Ovary	ovary
9	chr10:18468200-18469600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:18468400-18469600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:18468400-18469600	Flanking Active TSS	Fetal Heart	heart
12	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
13	chr10:18468800-18469600	Enhancers	Psoas Muscle	Psoas
14	chr10:18469000-18469600	Enhancers	Brain Substantia Nigra	brain
15	chr10:18469000-18469600	Enhancers	Pancreas	Pancrea
16	chr10:18469000-18470200	Enhancers	Right Atrium	heart
17	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
18	chr10:18469200-18469600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:18469200-18469600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:18469200-18469600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:18469200-18469600	Enhancers	Fetal Brain Female	brain
22	chr10:18469200-18469600	Flanking Active TSS	Rectal Smooth Muscle	rectum
23	chr10:18469200-18469600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
25	chr10:18469400-18469600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:18469400-18469600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:18469400-18469600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:18469400-18469600	Enhancers	Adipose Nuclei	Adipose
29	chr10:18469400-18469600	Enhancers	Fetal Lung	lung
30	chr10:18469400-18469600	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr10:18469400-18469800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:18469400-18469800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr10:18469400-18469800	Enhancers	Left Ventricle	heart
34	chr10:18469400-18470200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr10:18469400-18470200	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr10:18469400-18470400	Enhancers	Colon Smooth Muscle	Colon
37	chr10:18469400-18474400	Weak transcription	Brain Angular Gyrus	brain
38	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
39	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood

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