Variant report

Variant	rs1757246
Chromosome Location	chr10:18480728-18480729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1779244	0.81[EUR][1000 genomes]
rs1892009	0.82[ASN][1000 genomes]
rs2482101	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2482103	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2489211	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
9	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
10	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
11	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:18475000-18481000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:18479400-18483000	Weak transcription	Ovary	ovary
15	chr10:18479400-18484200	Weak transcription	Right Ventricle	heart
16	chr10:18479800-18483200	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:18480000-18484400	Weak transcription	Left Ventricle	heart
18	chr10:18480400-18484000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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