Variant report

Variant	rs11013379
Chromosome Location	chr10:23598817-23598818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828418	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013316	0.95[EUR][1000 genomes]
rs11013318	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11013358	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013359	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013362	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11013367	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013370	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013389	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11013398	0.90[EUR][1000 genomes]
rs11013405	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12355855	0.86[EUR][1000 genomes]
rs12358964	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137155	0.85[EUR][1000 genomes]
rs4439422	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4614340	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60845874	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070758	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7071484	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7075896	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7078858	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7079718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090683	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72788416	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72802182	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7908326	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909029	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23593200-23599400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:23598600-23600000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:23598600-23600000	Enhancers	Ovary	ovary
4	chr10:23598800-23600400	Enhancers	Fetal Heart	heart

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