Variant report

Variant	rs11013405
Chromosome Location	chr10:23629840-23629841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:23629777-23630294	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ENSG00000224215	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828418	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013316	0.86[EUR][1000 genomes]
rs11013318	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11013358	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013359	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013362	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013367	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11013370	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11013379	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11013389	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013398	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12355855	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12358964	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2137155	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4439422	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4614340	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60845874	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7070758	0.86[EUR][1000 genomes]
rs7071484	0.86[EUR][1000 genomes]
rs7075896	0.86[EUR][1000 genomes]
rs7078858	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7079718	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7090683	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72788416	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72802182	0.85[EUR][1000 genomes]
rs7908326	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7909029	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23619600-23631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23627000-23630200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:23627400-23632600	Weak transcription	Left Ventricle	heart
5	chr10:23627600-23630600	Enhancers	Hela-S3	cervix
6	chr10:23627800-23630200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:23628000-23632400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:23628400-23632400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr10:23628600-23630000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:23628600-23630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:23628600-23632200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:23628600-23632400	Weak transcription	HMEC	breast
13	chr10:23628600-23632400	Weak transcription	NHEK	skin
14	chr10:23628600-23632600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:23628600-23632600	Weak transcription	Right Atrium	heart
16	chr10:23628600-23632800	Weak transcription	Liver	Liver
17	chr10:23628800-23630000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:23628800-23630600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:23628800-23632400	Weak transcription	Osteobl	bone
20	chr10:23628800-23632600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:23629000-23630000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:23629000-23631600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:23629400-23630400	Enhancers	Fetal Heart	heart
24	chr10:23629400-23632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:23629400-23632200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:23629400-23632400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:23629600-23630400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:23629600-23630400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:23629600-23630600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr10:23629600-23630600	Enhancers	Dnd41	blood
31	chr10:23629600-23631800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:23629800-23630200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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