Variant report

Variant	rs72788416
Chromosome Location	chr10:23604352-23604353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23603372..23604417-chr10:23814073..23814964,4	MCF-7	breast:
2	chr10:23603846..23604395-chr10:23818883..23819635,2	MCF-7	breast:
3	chr10:23447014..23447706-chr10:23603415..23604399,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828418	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11013316	0.94[EUR][1000 genomes]
rs11013318	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013358	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11013359	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11013362	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11013367	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11013370	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013379	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013389	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11013398	0.89[EUR][1000 genomes]
rs11013405	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12355855	0.85[EUR][1000 genomes]
rs12358964	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137155	0.84[EUR][1000 genomes]
rs4439422	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4614340	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60845874	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070758	0.96[EUR][1000 genomes]
rs7071484	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7075896	0.96[EUR][1000 genomes]
rs7078858	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7079718	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090683	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72802182	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7908326	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909029	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599600-23605000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:23603200-23607200	Enhancers	Hela-S3	cervix
4	chr10:23603600-23604600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:23604000-23604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:23604000-23605200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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