Variant report

Variant	rs11014272
Chromosome Location	chr10:25160883-25160884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25155314..25157909-chr10:25160778..25162370,2	K562	blood:

Variant related genes	Relation type
ENSG00000228667	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11014236	1.00[AMR][1000 genomes]
rs12243323	1.00[AMR][1000 genomes]
rs12245230	1.00[AMR][1000 genomes]
rs12252087	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25153000-25161200	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:25153000-25162400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:25155200-25161000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:25155600-25162200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:25156200-25161000	Weak transcription	NHLF	lung
6	chr10:25156400-25161800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:25156400-25162200	Weak transcription	Small Intestine	intestine
8	chr10:25156600-25161000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:25156600-25161000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:25156600-25162000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:25156600-25162000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:25156600-25162000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:25156600-25162400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:25156600-25163800	Weak transcription	Dnd41	blood
15	chr10:25156600-25167400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:25158200-25162000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:25158600-25162200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:25158600-25162200	Weak transcription	A549	lung
19	chr10:25158800-25161000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:25158800-25161000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:25158800-25161000	Weak transcription	HSMM	muscle
22	chr10:25158800-25161200	Weak transcription	HMEC	breast
23	chr10:25158800-25161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:25158800-25162000	Weak transcription	NHEK	skin
25	chr10:25158800-25179600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:25159000-25162000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:25159000-25162200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:25159000-25162200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:25159000-25162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:25159000-25168800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:25159600-25163000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr10:25159600-25163600	Enhancers	Hela-S3	cervix
33	chr10:25160000-25161400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:25160000-25161400	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:25160000-25161600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:25160200-25161400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr10:25160200-25161400	Flanking Active TSS	Fetal Brain Male	brain
38	chr10:25160200-25161600	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr10:25160200-25161600	Enhancers	Fetal Stomach	stomach
40	chr10:25160200-25162400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:25160200-25162400	Enhancers	K562	blood
42	chr10:25160200-25162800	Enhancers	Fetal Lung	lung
43	chr10:25160400-25161400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:25160400-25161400	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr10:25160400-25161600	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr10:25160400-25161600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr10:25160600-25161200	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr10:25160600-25161200	Enhancers	Stomach Mucosa	stomach
49	chr10:25160600-25161400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr10:25160600-25161400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links