Variant report

Variant	rs12252087
Chromosome Location	chr10:25154173-25154174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:25153992-25154813	SK-N-SH	brain:	n/a	chr10:25154420-25154430 chr10:25154349-25154356
2	JUND	chr10:25154064-25154693	SK-N-SH	brain:	n/a	chr10:25154395-25154405 chr10:25154395-25154405
3	STAT3	chr10:25154154-25154563	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr10:25153997-25154582	MCF10A-Er-Src	breast:	n/a	chr10:25154394-25154405 chr10:25154395-25154405 chr10:25154395-25154405
5	FOSL2	chr10:25153947-25154631	A549	lung:	n/a	chr10:25154395-25154405 chr10:25154395-25154405
6	POLR2A	chr10:25154150-25154570	SK-N-SH	brain:	n/a	n/a
7	FOSL2	chr10:25154064-25154678	SK-N-SH	brain:	n/a	chr10:25154395-25154405 chr10:25154395-25154405
8	ZKSCAN1	chr10:25153949-25154424	Hela-S3	cervix:	n/a	n/a
9	EP300	chr10:25154043-25154721	SK-N-SH	brain:	n/a	n/a
10	FOS	chr10:25154073-25154537	MCF10A-Er-Src	breast:	n/a	chr10:25154394-25154405 chr10:25154395-25154405 chr10:25154395-25154405
11	STAT3	chr10:25154084-25154560	MCF10A-Er-Src	breast:	n/a	chr10:25154152-25154163
12	TCF12	chr10:25154042-25154748	SK-N-SH	brain:	n/a	n/a
13	TCF12	chr10:25154055-25154725	SK-N-SH	brain:	n/a	n/a
14	GATA3	chr10:25154081-25154620	MCF-7	breast:	n/a	chr10:25154420-25154430 chr10:25154349-25154356
15	GATA3	chr10:25154050-25154758	SK-N-SH	brain:	n/a	chr10:25154420-25154430 chr10:25154349-25154356
16	NFIC	chr10:25154036-25154628	SK-N-SH	brain:	n/a	n/a
17	GATA3	chr10:25154168-25154779	MCF-7	breast:	n/a	chr10:25154420-25154430 chr10:25154349-25154356
18	STAT3	chr10:25154099-25154556	MCF10A-Er-Src	breast:	n/a	chr10:25154152-25154163
19	PRDM1	chr10:25153990-25154340	Hela-S3	cervix:	n/a	chr10:25154151-25154164 chr10:25154149-25154164 chr10:25154157-25154166 chr10:25154150-25154164
20	PBX3	chr10:25154077-25154717	SK-N-SH	brain:	n/a	n/a
21	FOS	chr10:25154036-25154575	MCF10A-Er-Src	breast:	n/a	chr10:25154394-25154405 chr10:25154395-25154405 chr10:25154395-25154405
22	RCOR1	chr10:25154066-25154473	Hela-S3	cervix:	n/a	n/a
23	PBX3	chr10:25154123-25154585	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25137912..25139904-chr10:25154066..25156148,2	K562	blood:

Variant related genes	Relation type
ENSG00000228667	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11014236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014272	1.00[AMR][1000 genomes]
rs12243323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25137600-25158400	Weak transcription	Ovary	ovary
2	chr10:25139800-25155800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:25146600-25154200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:25146800-25155600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:25147400-25156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:25148000-25154200	Weak transcription	A549	lung
7	chr10:25148000-25155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:25148200-25154400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:25148200-25155200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:25148200-25158400	Weak transcription	HSMM	muscle
11	chr10:25148400-25154200	Weak transcription	K562	blood
12	chr10:25148400-25155000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:25148600-25154200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:25148600-25154200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:25152200-25156200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:25152600-25154400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:25152800-25154400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:25153000-25154200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:25153000-25154600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:25153000-25154600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:25153000-25154600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:25153000-25160200	Weak transcription	Fetal Stomach	stomach
23	chr10:25153000-25161200	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:25153000-25162400	Weak transcription	Fetal Intestine Small	intestine
25	chr10:25153200-25154200	Weak transcription	Fetal Lung	lung
26	chr10:25153200-25155400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr10:25153400-25156000	Enhancers	Brain Angular Gyrus	brain
28	chr10:25153400-25156200	Enhancers	NHLF	lung
29	chr10:25153400-25156400	Enhancers	NHEK	skin
30	chr10:25153400-25156600	Enhancers	HMEC	breast
31	chr10:25153600-25154400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:25153600-25154800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:25153800-25156600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:25153800-25156600	Enhancers	Hela-S3	cervix
35	chr10:25154000-25154400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr10:25154000-25154800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:25154000-25155400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:25154000-25155400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:25154000-25155600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr10:25154000-25156000	Enhancers	NH-A	brain
41	chr10:25154000-25156400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:25154000-25156400	Enhancers	HUVEC	blood vessel
43	chr10:25154000-25156600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:25154000-25158600	Weak transcription	Primary T cells fromperipheralblood	blood

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