Variant report
| Variant | rs11015042 |
|---|---|
| Chromosome Location | chr10:26628996-26628997 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10466097 | 1.00[AMR][1000 genomes] |
| rs11015041 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11015044 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11015045 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11015062 | 1.00[AMR][1000 genomes] |
| rs12245905 | 1.00[AMR][1000 genomes] |
| rs12256340 | 1.00[AMR][1000 genomes] |
| rs12263068 | 1.00[AMR][1000 genomes] |
| rs12269473 | 1.00[AMR][1000 genomes] |
| rs55923319 | 1.00[AMR][1000 genomes] |
| rs56194212 | 1.00[AMR][1000 genomes] |
| rs56201961 | 1.00[AMR][1000 genomes] |
| rs57729809 | 1.00[AMR][1000 genomes] |
| rs61012151 | 1.00[AMR][1000 genomes] |
| rs74126404 | 1.00[AMR][1000 genomes] |
| rs74126408 | 1.00[AMR][1000 genomes] |
| rs74126411 | 1.00[AMR][1000 genomes] |
| rs74126455 | 1.00[AMR][1000 genomes] |
| rs74129117 | 1.00[AMR][1000 genomes] |
| rs74129118 | 1.00[AMR][1000 genomes] |
| rs74129120 | 1.00[AMR][1000 genomes] |
| rs74129123 | 1.00[AMR][1000 genomes] |
| rs74129124 | 1.00[AMR][1000 genomes] |
| rs8190673 | 1.00[AMR][1000 genomes] |
| rs8190778 | 1.00[AMR][1000 genomes] |
| rs8190797 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26624800-26633400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
