Variant report

Variant	rs61012151
Chromosome Location	chr10:26501821-26501822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10466097	1.00[AMR][1000 genomes]
rs11015041	1.00[AMR][1000 genomes]
rs11015042	1.00[AMR][1000 genomes]
rs11015044	1.00[AMR][1000 genomes]
rs11015045	1.00[AMR][1000 genomes]
rs11015062	1.00[AMR][1000 genomes]
rs12245905	1.00[AMR][1000 genomes]
rs12256340	1.00[AMR][1000 genomes]
rs12263068	1.00[AMR][1000 genomes]
rs12269473	1.00[AMR][1000 genomes]
rs55923319	1.00[AMR][1000 genomes]
rs56194212	1.00[AMR][1000 genomes]
rs56201961	1.00[AMR][1000 genomes]
rs57729809	1.00[AMR][1000 genomes]
rs74126404	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126408	1.00[AMR][1000 genomes]
rs74126411	1.00[AMR][1000 genomes]
rs74126455	1.00[AMR][1000 genomes]
rs74129117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190673	1.00[AMR][1000 genomes]
rs8190778	1.00[AMR][1000 genomes]
rs8190797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26501000-26503000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26501000-26503800	Weak transcription	Gastric	stomach
3	chr10:26501200-26502000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr10:26501200-26502400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
5	chr10:26501200-26502600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:26501200-26502800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr10:26501400-26503000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:26501400-26503200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr10:26501600-26502000	Bivalent Enhancer	Spleen	Spleen
10	chr10:26501600-26502200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr10:26501600-26502600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr10:26501600-26502800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr10:26501800-26502000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr10:26501800-26502200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
15	chr10:26501800-26502200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:26501800-26502600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
17	chr10:26501800-26503000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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