Variant report

Variant	rs57729809
Chromosome Location	chr10:26564922-26564923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10466097	1.00[AMR][1000 genomes]
rs11015041	1.00[AMR][1000 genomes]
rs11015042	1.00[AMR][1000 genomes]
rs11015044	1.00[AMR][1000 genomes]
rs11015045	1.00[AMR][1000 genomes]
rs11015062	1.00[AMR][1000 genomes]
rs12245905	1.00[AMR][1000 genomes]
rs12256340	1.00[AMR][1000 genomes]
rs12263068	1.00[AMR][1000 genomes]
rs12269473	1.00[AMR][1000 genomes]
rs55923319	1.00[AMR][1000 genomes]
rs56194212	1.00[AMR][1000 genomes]
rs56201961	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61012151	1.00[AMR][1000 genomes]
rs74126404	1.00[AMR][1000 genomes]
rs74126408	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126455	1.00[AMR][1000 genomes]
rs74129117	1.00[AMR][1000 genomes]
rs74129118	1.00[AMR][1000 genomes]
rs74129120	1.00[AMR][1000 genomes]
rs74129123	1.00[AMR][1000 genomes]
rs74129124	1.00[AMR][1000 genomes]
rs8190673	1.00[AMR][1000 genomes]
rs8190778	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190797	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26562400-26565600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26564000-26569200	Weak transcription	Fetal Brain Male	brain
4	chr10:26564000-26581800	Weak transcription	Brain Anterior Caudate	brain
5	chr10:26564200-26566400	Strong transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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