Variant report

Variant	rs11015323
Chromosome Location	chr10:18934419-18934420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18929497..18932239-chr10:18933812..18935882,2	MCF-7	breast:
2	chr10:18933676..18935370-chr10:18939800..18942129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241058	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10466095	0.93[YRI][hapmap]
rs10508564	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs11014769	0.85[YRI][hapmap]
rs11014986	0.94[YRI][hapmap]
rs11015036	0.93[YRI][hapmap]
rs11015184	0.88[YRI][hapmap]
rs11015254	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11015443	0.83[AMR][1000 genomes]
rs12243188	0.94[YRI][hapmap]
rs12246317	0.83[AMR][1000 genomes]
rs12246433	0.83[AMR][1000 genomes]
rs12247548	0.83[AMR][1000 genomes]
rs12247869	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs12249604	0.93[YRI][hapmap]
rs12258688	0.83[AMR][1000 genomes]
rs12267659	1.00[AMR][1000 genomes]
rs16917589	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs16917615	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs16917628	0.93[YRI][hapmap]
rs17363677	0.87[YRI][hapmap]
rs28794621	0.83[AMR][1000 genomes]
rs4614337	0.87[YRI][hapmap]
rs7088674	0.83[AMR][1000 genomes]
rs7100918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18905000-18938200	Weak transcription	Hela-S3	cervix
2	chr10:18916800-18935200	Weak transcription	K562	blood
3	chr10:18916800-18936200	Weak transcription	A549	lung
4	chr10:18916800-18937000	Weak transcription	GM12878-XiMat	blood
5	chr10:18916800-18938400	Weak transcription	HSMMtube	muscle
6	chr10:18916800-18939800	Weak transcription	Aorta	Aorta
7	chr10:18916800-18940200	Weak transcription	Spleen	Spleen
8	chr10:18917000-18934600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:18917000-18934600	Weak transcription	Fetal Brain Female	brain
10	chr10:18917000-18934800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:18917000-18934800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:18917000-18935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:18917000-18935000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:18917000-18936800	Weak transcription	Brain Germinal Matrix	brain
15	chr10:18917000-18937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:18917000-18937400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:18917000-18938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:18917000-18938200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:18917000-18938200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:18917000-18938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:18917000-18938200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:18917000-18938200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:18917000-18938200	Weak transcription	Brain Angular Gyrus	brain
24	chr10:18917000-18938400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:18917000-18938400	Weak transcription	Ovary	ovary
26	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:18917000-18938800	Weak transcription	HSMM	muscle
29	chr10:18917000-18939600	Weak transcription	Placenta	Placenta
30	chr10:18917000-18939800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:18917000-18940200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:18917000-18940200	Weak transcription	Lung	lung
33	chr10:18917200-18935600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:18917200-18937800	Weak transcription	Adipose Nuclei	Adipose
35	chr10:18921400-18939000	Weak transcription	Right Ventricle	heart
36	chr10:18922600-18939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:18923200-18936600	Weak transcription	Fetal Brain Male	brain
38	chr10:18924800-18937800	Weak transcription	Fetal Lung	lung
39	chr10:18925200-18937600	Weak transcription	Fetal Heart	heart
40	chr10:18925200-18939200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:18925600-18939400	Weak transcription	Brain Substantia Nigra	brain
42	chr10:18926000-18940200	Weak transcription	Small Intestine	intestine
43	chr10:18926200-18939200	Weak transcription	Fetal Kidney	kidney
44	chr10:18926400-18938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:18926600-18938200	Weak transcription	NHEK	skin
46	chr10:18927400-18939600	Weak transcription	Pancreas	Pancrea
47	chr10:18927800-18937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:18928000-18938400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:18928200-18935000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:18928200-18938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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