Variant report

Variant	rs12267659
Chromosome Location	chr10:18970700-18970701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18962456..18966517-chr10:18966877..18973376,6	K562	blood:
2	chr10:18969086..18970965-chr10:18973281..18975325,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10466095	0.90[AFR][1000 genomes]
rs10508564	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11014994	0.85[AFR][1000 genomes]
rs11015019	0.89[AFR][1000 genomes]
rs11015036	0.89[AFR][1000 genomes]
rs11015184	0.89[AFR][1000 genomes]
rs11015323	1.00[AMR][1000 genomes]
rs11015443	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12246317	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12246433	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12247548	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12247869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249604	0.83[AFR][1000 genomes]
rs12250601	0.90[AFR][1000 genomes]
rs12255014	0.84[AFR][1000 genomes]
rs12258306	0.90[AFR][1000 genomes]
rs12258688	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12269605	0.93[AFR][1000 genomes]
rs16917589	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16917615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16917628	0.92[AFR][1000 genomes]
rs17363677	0.89[AFR][1000 genomes]
rs28794621	0.83[AMR][1000 genomes]
rs4614337	0.93[AFR][1000 genomes]
rs7088674	0.83[AMR][1000 genomes]
rs7100918	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18949400-18973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:18949600-18972000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18951000-18971800	Weak transcription	Spleen	Spleen
4	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:18951400-18973800	Weak transcription	Aorta	Aorta
6	chr10:18954400-18973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:18955000-18972600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:18956000-18972200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:18956200-18973200	Weak transcription	Small Intestine	intestine
10	chr10:18957400-18971600	Weak transcription	Fetal Heart	heart
11	chr10:18957600-18971200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:18957800-18971000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:18959000-18973600	Weak transcription	Left Ventricle	heart
14	chr10:18960000-18972400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:18960800-18973400	Weak transcription	Ovary	ovary
16	chr10:18961000-18970800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:18961000-18973600	Weak transcription	Thymus	Thymus
18	chr10:18961600-18971000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:18962400-18973600	Weak transcription	Fetal Intestine Small	intestine
20	chr10:18962400-18973600	Weak transcription	Fetal Stomach	stomach
21	chr10:18963200-18973400	Weak transcription	Pancreas	Pancrea
22	chr10:18964000-18972200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:18964000-18973000	Weak transcription	Primary T cells from cord blood	blood
24	chr10:18964200-18973400	Weak transcription	Psoas Muscle	Psoas
25	chr10:18964600-18973600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:18964600-18973800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:18964800-18970800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:18964800-18973400	Weak transcription	Fetal Brain Female	brain
29	chr10:18964800-18973400	Weak transcription	HUVEC	blood vessel
30	chr10:18964800-18973800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:18965000-18972800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:18965000-18973400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:18965200-18971600	Weak transcription	Placenta	Placenta
34	chr10:18965200-18972200	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:18965200-18972400	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:18965200-18973400	Weak transcription	Brain Germinal Matrix	brain
37	chr10:18965200-18973400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:18965400-18973000	Weak transcription	Fetal Thymus	thymus
39	chr10:18966200-18971200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:18966200-18972000	Weak transcription	Adipose Nuclei	Adipose
41	chr10:18966200-18972200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:18966200-18972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:18966200-18973000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:18966200-18973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:18966200-18973400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:18966200-18976000	Weak transcription	HepG2	liver
47	chr10:18966600-18971000	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr10:18966600-18972400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr10:18966600-18973200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:18966600-18973400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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