Variant report

Variant	rs11015569
Chromosome Location	chr10:27432001-27432002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27431175..27433119-chr10:27441858..27444183,2	K562	blood:
2	chr10:27430806..27432667-chr10:27529142..27532060,2	MCF-7	breast:
3	chr10:27418452..27420910-chr10:27431210..27433403,2	K562	blood:
4	chr10:27411542..27413945-chr10:27429533..27432280,2	K562	blood:

Variant related genes	Relation type
ENSG00000262412	Chromatin interaction
ENSG00000120539	Chromatin interaction
ENSG00000107897	Chromatin interaction
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10764674	1.00[AMR][1000 genomes]
rs10829210	1.00[AMR][1000 genomes]
rs1148168	1.00[AMR][1000 genomes]
rs1148170	1.00[AMR][1000 genomes]
rs1630674	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1753410	1.00[AMR][1000 genomes]
rs1755400	1.00[AMR][1000 genomes]
rs1755402	1.00[AMR][1000 genomes]
rs1775355	1.00[AMR][1000 genomes]
rs1887824	1.00[AMR][1000 genomes]
rs2479910	1.00[AMR][1000 genomes]
rs2479913	1.00[AMR][1000 genomes]
rs2479916	1.00[AMR][1000 genomes]
rs2480716	1.00[AMR][1000 genomes]
rs2480717	1.00[AMR][1000 genomes]
rs2489371	1.00[AMR][1000 genomes]
rs3118890	1.00[AMR][1000 genomes]
rs4747591	1.00[AMR][1000 genomes]
rs487219	1.00[AMR][1000 genomes]
rs493598	1.00[AMR][1000 genomes]
rs525441	1.00[AMR][1000 genomes]
rs530567	1.00[AMR][1000 genomes]
rs56030738	1.00[AMR][1000 genomes]
rs605028	1.00[AMR][1000 genomes]
rs605354	1.00[AMR][1000 genomes]
rs607717	1.00[AMR][1000 genomes]
rs620401	1.00[AMR][1000 genomes]
rs641128	1.00[AMR][1000 genomes]
rs646612	1.00[AMR][1000 genomes]
rs658082	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs695044	1.00[AMR][1000 genomes]
rs788200	1.00[AMR][1000 genomes]
rs788206	1.00[AMR][1000 genomes]
rs788213	1.00[AMR][1000 genomes]
rs788217	1.00[AMR][1000 genomes]
rs788224	1.00[AMR][1000 genomes]
rs788225	1.00[AMR][1000 genomes]
rs788231	1.00[AMR][1000 genomes]
rs788233	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs788236	1.00[AMR][1000 genomes]
rs788238	1.00[AMR][1000 genomes]
rs796842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
10	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:27398600-27436400	Strong transcription	Dnd41	blood
16	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:27400400-27438400	Strong transcription	Liver	Liver
22	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:27407800-27436400	Weak transcription	Right Ventricle	heart
24	chr10:27411200-27436000	Weak transcription	Esophagus	oesophagus
25	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
26	chr10:27415400-27436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:27418000-27436400	Weak transcription	Spleen	Spleen
28	chr10:27419200-27438600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:27419200-27438800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
31	chr10:27419800-27436200	Weak transcription	Gastric	stomach
32	chr10:27421000-27436200	Weak transcription	Fetal Brain Male	brain
33	chr10:27423400-27436400	Weak transcription	Colonic Mucosa	Colon
34	chr10:27423600-27435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:27423800-27435600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:27424000-27432800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:27424000-27432800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:27424000-27436400	Weak transcription	Small Intestine	intestine
39	chr10:27424200-27432400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:27424600-27432400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:27424800-27436000	Weak transcription	Aorta	Aorta
42	chr10:27425000-27433000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:27425000-27433000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr10:27425000-27434800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:27425000-27436200	Weak transcription	Brain Substantia Nigra	brain
46	chr10:27425200-27433200	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:27425400-27432800	Weak transcription	NHLF	lung
48	chr10:27425400-27435000	Weak transcription	Brain Angular Gyrus	brain
49	chr10:27425600-27432600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:27425600-27435200	Weak transcription	Rectal Smooth Muscle	rectum

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