Variant report
Variant | rs646612 |
---|---|
Chromosome Location | chr10:27555465-27555466 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:27531009..27532582-chr10:27554298..27557001,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000262412 | Chromatin interaction |
ENSG00000107897 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10764674 | 1.00[AMR][1000 genomes] |
rs10829210 | 1.00[AMR][1000 genomes] |
rs11015569 | 1.00[AMR][1000 genomes] |
rs1148168 | 1.00[AMR][1000 genomes] |
rs1148170 | 1.00[AMR][1000 genomes] |
rs1630674 | 1.00[AMR][1000 genomes] |
rs1753410 | 1.00[AMR][1000 genomes] |
rs1755400 | 1.00[AMR][1000 genomes] |
rs1755402 | 1.00[AMR][1000 genomes] |
rs1775355 | 1.00[AMR][1000 genomes] |
rs1887824 | 1.00[AMR][1000 genomes] |
rs2479910 | 1.00[AMR][1000 genomes] |
rs2479913 | 1.00[AMR][1000 genomes] |
rs2479916 | 1.00[AMR][1000 genomes] |
rs2480716 | 1.00[AMR][1000 genomes] |
rs2480717 | 1.00[AMR][1000 genomes] |
rs2489371 | 1.00[AMR][1000 genomes] |
rs3118890 | 1.00[AMR][1000 genomes] |
rs4747591 | 1.00[AMR][1000 genomes] |
rs487219 | 1.00[AMR][1000 genomes] |
rs493598 | 1.00[AMR][1000 genomes] |
rs525441 | 1.00[AMR][1000 genomes] |
rs530567 | 1.00[AMR][1000 genomes] |
rs56030738 | 1.00[AMR][1000 genomes] |
rs605028 | 1.00[AMR][1000 genomes] |
rs605354 | 1.00[AMR][1000 genomes] |
rs607717 | 1.00[AMR][1000 genomes] |
rs60918938 | 1.00[AMR][1000 genomes] |
rs620401 | 1.00[AMR][1000 genomes] |
rs641128 | 1.00[AMR][1000 genomes] |
rs658082 | 1.00[AMR][1000 genomes] |
rs695044 | 1.00[AMR][1000 genomes] |
rs7082922 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7095372 | 1.00[AMR][1000 genomes] |
rs788200 | 1.00[AMR][1000 genomes] |
rs788206 | 1.00[AMR][1000 genomes] |
rs788213 | 1.00[AMR][1000 genomes] |
rs788217 | 1.00[AMR][1000 genomes] |
rs788224 | 1.00[AMR][1000 genomes] |
rs788225 | 1.00[AMR][1000 genomes] |
rs788231 | 1.00[AMR][1000 genomes] |
rs788233 | 1.00[AMR][1000 genomes] |
rs788236 | 1.00[AMR][1000 genomes] |
rs788238 | 1.00[AMR][1000 genomes] |
rs796842 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2422253 | chr10:27431366-27575370 | Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
2 | esv3337781 | chr10:27472216-27666703 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
3 | nsv8614 | chr10:27504487-27828406 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
4 | nsv947787 | chr10:27554852-27556123 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:27554600-27555600 | Enhancers | HepG2 | liver |