Variant report

Variant	rs56030738
Chromosome Location	chr10:27573280-27573281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27531276..27533998-chr10:27572512..27575307,2	K562	blood:

Variant related genes	Relation type
ENSG00000262412	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10764674	1.00[AMR][1000 genomes]
rs10829210	1.00[AMR][1000 genomes]
rs11015569	1.00[AMR][1000 genomes]
rs1148168	1.00[AMR][1000 genomes]
rs1148170	1.00[AMR][1000 genomes]
rs1630674	1.00[AMR][1000 genomes]
rs1753410	1.00[AMR][1000 genomes]
rs1755400	1.00[AMR][1000 genomes]
rs1755402	1.00[AMR][1000 genomes]
rs1775355	1.00[AMR][1000 genomes]
rs1887824	1.00[AMR][1000 genomes]
rs2479910	1.00[AMR][1000 genomes]
rs2479913	1.00[AMR][1000 genomes]
rs2479916	1.00[AMR][1000 genomes]
rs2480716	1.00[AMR][1000 genomes]
rs2480717	1.00[AMR][1000 genomes]
rs2489371	1.00[AMR][1000 genomes]
rs3118890	1.00[AMR][1000 genomes]
rs4747591	1.00[AMR][1000 genomes]
rs487219	1.00[AMR][1000 genomes]
rs493598	1.00[AMR][1000 genomes]
rs525441	1.00[AMR][1000 genomes]
rs530567	1.00[AMR][1000 genomes]
rs605028	1.00[AMR][1000 genomes]
rs605354	1.00[AMR][1000 genomes]
rs607717	1.00[AMR][1000 genomes]
rs60918938	1.00[AMR][1000 genomes]
rs620401	1.00[AMR][1000 genomes]
rs641128	1.00[AMR][1000 genomes]
rs646612	1.00[AMR][1000 genomes]
rs658082	1.00[AMR][1000 genomes]
rs695044	1.00[AMR][1000 genomes]
rs7082922	1.00[AMR][1000 genomes]
rs7095372	1.00[AMR][1000 genomes]
rs788200	1.00[AMR][1000 genomes]
rs788206	1.00[AMR][1000 genomes]
rs788213	1.00[AMR][1000 genomes]
rs788217	1.00[AMR][1000 genomes]
rs788224	1.00[AMR][1000 genomes]
rs788225	1.00[AMR][1000 genomes]
rs788231	1.00[AMR][1000 genomes]
rs788233	1.00[AMR][1000 genomes]
rs788236	1.00[AMR][1000 genomes]
rs788238	1.00[AMR][1000 genomes]
rs796842	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv3413607	chr10:27569733-27577795	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27573200-27574200	Enhancers	Liver	Liver

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