Variant report

Variant	rs11015574
Chromosome Location	chr10:27440144-27440145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27422371..27425893-chr10:27437367..27441285,4	K562	blood:
2	chr10:27426913..27428893-chr10:27439764..27442698,2	MCF-7	breast:
3	chr10:27438782..27440724-chr10:27531072..27532760,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000262412	Chromatin interaction
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10443968	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015451	1.00[EUR][1000 genomes]
rs11015453	1.00[EUR][1000 genomes]
rs11015475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015479	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11015480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015516	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015520	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015521	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015534	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015537	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015587	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11516861	1.00[EUR][1000 genomes]
rs12354721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354948	1.00[AMR][1000 genomes]
rs12356269	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359281	1.00[CEU][hapmap]
rs41282228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
5	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
6	chr10:27428000-27441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:27431800-27440400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:27431800-27442000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:27432800-27441400	Weak transcription	Psoas Muscle	Psoas
10	chr10:27435600-27442400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:27436800-27441400	Weak transcription	Small Intestine	intestine
12	chr10:27437000-27440400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27437000-27441200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:27437000-27441200	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:27437000-27441200	Weak transcription	HepG2	liver
16	chr10:27437000-27441200	Weak transcription	NHLF	lung
17	chr10:27437000-27441600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:27437200-27441600	Weak transcription	Colonic Mucosa	Colon
19	chr10:27437400-27441200	Weak transcription	Brain Germinal Matrix	brain
20	chr10:27437400-27441400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:27437400-27441600	Weak transcription	Aorta	Aorta
22	chr10:27437400-27442600	Weak transcription	Gastric	stomach
23	chr10:27437400-27442800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:27437600-27441200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:27437600-27441200	Weak transcription	Fetal Kidney	kidney
26	chr10:27437600-27441200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:27437600-27441200	Weak transcription	HMEC	breast
28	chr10:27437600-27441400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:27437600-27441400	Weak transcription	HSMMtube	muscle
30	chr10:27437800-27441400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:27438000-27440400	Weak transcription	Fetal Brain Male	brain
32	chr10:27438000-27441000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:27438000-27441000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:27438000-27441200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:27438000-27441200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:27438000-27441200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:27438000-27441200	Weak transcription	Primary B cells from cord blood	blood
38	chr10:27438000-27441200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:27438000-27441200	Weak transcription	Brain Anterior Caudate	brain
40	chr10:27438000-27441200	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:27438000-27441200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:27438000-27441200	Weak transcription	Brain Substantia Nigra	brain
43	chr10:27438000-27441200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:27438000-27441200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:27438000-27441200	Weak transcription	Fetal Lung	lung
46	chr10:27438000-27441200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr10:27438000-27441200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:27438000-27441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:27438000-27441200	Weak transcription	A549	lung
50	chr10:27438000-27441200	Weak transcription	HUVEC	blood vessel

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