Variant report

Variant	rs12354721
Chromosome Location	chr10:27434965-27434966
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27406142..27408031-chr10:27433375..27436019,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10443968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015451	1.00[EUR][1000 genomes]
rs11015453	1.00[EUR][1000 genomes]
rs11015475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015479	0.89[EUR][1000 genomes]
rs11015480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015516	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015520	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015521	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015534	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11516861	1.00[EUR][1000 genomes]
rs12354948	1.00[AMR][1000 genomes]
rs12356269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41282228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
8	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:27398600-27436400	Strong transcription	Dnd41	blood
10	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:27400400-27438400	Strong transcription	Liver	Liver
16	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27407800-27436400	Weak transcription	Right Ventricle	heart
18	chr10:27411200-27436000	Weak transcription	Esophagus	oesophagus
19	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
20	chr10:27415400-27436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:27418000-27436400	Weak transcription	Spleen	Spleen
22	chr10:27419200-27438600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:27419200-27438800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
25	chr10:27419800-27436200	Weak transcription	Gastric	stomach
26	chr10:27421000-27436200	Weak transcription	Fetal Brain Male	brain
27	chr10:27423400-27436400	Weak transcription	Colonic Mucosa	Colon
28	chr10:27423600-27435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:27423800-27435600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:27424000-27436400	Weak transcription	Small Intestine	intestine
31	chr10:27424800-27436000	Weak transcription	Aorta	Aorta
32	chr10:27425000-27436200	Weak transcription	Brain Substantia Nigra	brain
33	chr10:27425400-27435000	Weak transcription	Brain Angular Gyrus	brain
34	chr10:27425600-27435200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:27427000-27438600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:27427200-27436600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:27427200-27438000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:27427200-27438400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:27427600-27438000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:27428000-27438000	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr10:27428000-27438600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:27428000-27438800	Strong transcription	Fetal Intestine Large	intestine
43	chr10:27428000-27439000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:27428000-27441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:27428200-27437800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:27428200-27438000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr10:27428200-27438200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr10:27428200-27438600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:27428800-27438800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr10:27429000-27436400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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