The 2.0 version of rSNPBase

Variant report

Variant rs1101996
Chromosome Location chr1:158998026-158998027
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:158976000-159000800 Weak transcription Gastric stomach
2 chr1:158980200-159025400 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:158982600-159027400 Weak transcription Fetal Kidney kidney
4 chr1:158982800-159000200 Weak transcription Aorta Aorta
5 chr1:158984000-159000800 Weak transcription Right Ventricle heart
6 chr1:158984200-159024200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:158984800-159027400 Weak transcription Psoas Muscle Psoas
8 chr1:158985400-159023800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:158985800-159005000 Weak transcription Brain Angular Gyrus brain
10 chr1:158986000-159016200 Weak transcription Stomach Mucosa stomach
11 chr1:158987000-159000200 Weak transcription Brain Substantia Nigra brain
12 chr1:158987000-159000400 Weak transcription Fetal Muscle Trunk muscle
13 chr1:158987200-158998400 Weak transcription Brain Inferior Temporal Lobe brain
14 chr1:158987200-159000000 Weak transcription Small Intestine intestine
15 chr1:158987200-159000200 Weak transcription Stomach Smooth Muscle stomach
16 chr1:158987200-159000400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:158987200-159001200 Strong transcription Fetal Thymus thymus
18 chr1:158987800-159000200 Weak transcription Esophagus oesophagus
19 chr1:158988000-159002200 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:158988200-159000000 Weak transcription HSMMtube muscle
21 chr1:158988200-159000200 Weak transcription Left Ventricle heart
22 chr1:158988200-159016600 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr1:158988400-159002400 Weak transcription Fetal Brain Male brain
24 chr1:158988600-159024000 Strong transcription Primary hematopoietic stem cells short term culture blood
25 chr1:158988800-158999000 Genic enhancers Dnd41 blood
26 chr1:158988800-159000800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:158989000-159002400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:158989000-159003000 Weak transcription Colonic Mucosa Colon
29 chr1:158989800-159004200 Weak transcription Brain Cingulate Gyrus brain
30 chr1:158990200-158999800 Weak transcription Brain Hippocampus Middle brain
31 chr1:158990200-159000200 Weak transcription Brain Anterior Caudate brain
32 chr1:158991000-159000000 Weak transcription Placenta Placenta
33 chr1:158991600-158998400 Weak transcription Fetal Lung lung
34 chr1:158991600-158998400 Weak transcription Rectal Smooth Muscle rectum
35 chr1:158991600-159000200 Weak transcription Liver Liver
36 chr1:158991600-159000200 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:158991600-159000200 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:158991600-159000400 Weak transcription Duodenum Mucosa Duodenum
39 chr1:158992400-159000200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:158992600-158998400 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:158993000-159023200 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr1:158993800-159000600 Weak transcription HMEC breast
43 chr1:158993800-159002000 Weak transcription NH-A brain
44 chr1:158994000-159000200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:158994000-159000800 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr1:158994200-158998800 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:158994200-158999000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
48 chr1:158994400-159000000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:158994400-159000000 Weak transcription Adipose Nuclei Adipose
50 chr1:158994400-159000200 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015