Variant report
| Variant | rs11020124 |
|---|---|
| Chromosome Location | chr11:92690661-92690662 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10741452 | 0.99[ASN][1000 genomes] |
| rs10765572 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10765573 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10765575 | 1.00[ASN][1000 genomes] |
| rs10830956 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10830957 | 0.98[ASN][1000 genomes] |
| rs10830958 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10830959 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10830960 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10830961 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11020114 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11020115 | 0.82[ASN][1000 genomes] |
| rs11020116 | 0.99[ASN][1000 genomes] |
| rs11020123 | 1.00[ASN][1000 genomes] |
| rs11523890 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1985254 | 1.00[ASN][1000 genomes] |
| rs2121647 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2121648 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2121649 | 1.00[ASN][1000 genomes] |
| rs2121650 | 1.00[ASN][1000 genomes] |
| rs2121651 | 1.00[ASN][1000 genomes] |
| rs2166704 | 1.00[ASN][1000 genomes] |
| rs2166706 | 1.00[ASN][1000 genomes] |
| rs6483206 | 0.99[ASN][1000 genomes] |
| rs7933855 | 1.00[ASN][1000 genomes] |
| rs7936247 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7945617 | 0.80[ASN][1000 genomes] |
| rs7948632 | 0.98[ASN][1000 genomes] |
| rs7948640 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044571 | chr11:92495213-92742314 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv555903 | chr11:92640787-92877533 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv555904 | chr11:92640787-92881933 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:92685400-92692800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
