Variant report

Variant	rs10830956
Chromosome Location	chr11:92681013-92681014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10741452	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10765572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765573	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10765575	1.00[ASN][1000 genomes]
rs10830957	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10830958	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10830959	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830960	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10830961	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11020114	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11020115	0.82[ASN][1000 genomes]
rs11020116	0.99[ASN][1000 genomes]
rs11020123	1.00[ASN][1000 genomes]
rs11020124	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11523890	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1985254	1.00[ASN][1000 genomes]
rs2121647	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2121648	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121649	1.00[ASN][1000 genomes]
rs2121650	1.00[ASN][1000 genomes]
rs2121651	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2166704	1.00[ASN][1000 genomes]
rs2166706	1.00[ASN][1000 genomes]
rs3847554	0.82[JPT][hapmap]
rs6483206	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7933855	1.00[ASN][1000 genomes]
rs7936247	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7945617	0.80[ASN][1000 genomes]
rs7948632	0.98[ASN][1000 genomes]
rs7948640	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3380837	chr11:92676849-92682534	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Metabolic syndrome (bivariate traits)	21386085	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92675600-92688600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:92676400-92681600	Weak transcription	Placenta	Placenta
3	chr11:92680600-92681200	Enhancers	Liver	Liver
4	chr11:92680800-92681200	Weak transcription	A549	lung
5	chr11:92680800-92681600	Weak transcription	Stomach Mucosa	stomach
6	chr11:92680800-92682200	Enhancers	HepG2	liver
7	chr11:92681000-92681800	Active TSS	Pancreatic Islets	Pancreatic Islet

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