Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:92699023..92701502-chr11:92929730..92932356,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180773	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466351	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10765572	0.80[ASN][1000 genomes]
rs10765573	0.80[ASN][1000 genomes]
rs10765575	0.80[ASN][1000 genomes]
rs10830956	0.80[ASN][1000 genomes]
rs10830958	0.80[ASN][1000 genomes]
rs10830959	0.80[ASN][1000 genomes]
rs10830960	0.80[ASN][1000 genomes]
rs10830961	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10830962	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11020114	0.80[ASN][1000 genomes]
rs11020115	0.81[AMR][1000 genomes]
rs11020116	0.84[AMR][1000 genomes]
rs11020123	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11020124	0.80[ASN][1000 genomes]
rs11523890	0.80[ASN][1000 genomes]
rs1985254	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2121647	0.80[ASN][1000 genomes]
rs2121648	0.80[ASN][1000 genomes]
rs2121649	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2121650	0.80[ASN][1000 genomes]
rs2121651	0.80[ASN][1000 genomes]
rs2166704	0.80[ASN][1000 genomes]
rs2166706	0.80[ASN][1000 genomes]
rs4331050	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933855	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7936247	0.80[ASN][1000 genomes]
rs7941837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7948632	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7948640	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92698000-92702600	Weak transcription	Gastric	stomach
2	chr11:92700000-92701000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:92700200-92700400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:92700200-92700400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:92700200-92700400	Enhancers	Esophagus	oesophagus

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