Variant report

Variant	rs11020421
Chromosome Location	chr11:93307477-93307478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10831063	0.88[ASN][1000 genomes]
rs10831064	0.88[ASN][1000 genomes]
rs11020417	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11020420	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11020426	0.85[ASN][1000 genomes]
rs11020427	0.87[ASN][1000 genomes]
rs12222957	0.81[ASN][1000 genomes]
rs1954783	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2399686	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2399688	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34679231	0.87[ASN][1000 genomes]
rs4237559	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4753089	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4753093	0.82[ASN][1000 genomes]
rs4753480	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7120590	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11020421	FN5	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93302200-93310400	Weak transcription	Psoas Muscle	Psoas
2	chr11:93304600-93308800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:93304800-93309200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:93305800-93310000	Weak transcription	Hela-S3	cervix
5	chr11:93306800-93309800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:93306800-93310400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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