Variant report

Variant	rs10831064
Chromosome Location	chr11:93324551-93324552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10765617	0.91[EUR][1000 genomes]
rs10831062	0.94[EUR][1000 genomes]
rs10831063	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831076	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10831077	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10831079	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11020421	0.88[ASN][1000 genomes]
rs11020426	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020450	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11020452	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11020453	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11020454	0.91[EUR][1000 genomes]
rs11020455	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11606802	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12222957	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1939570	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939571	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939572	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1954783	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2155247	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2399688	0.86[ASN][1000 genomes]
rs34679231	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237559	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4753089	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4753093	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4753094	0.91[EUR][1000 genomes]
rs4753480	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67011570	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7119935	0.92[EUR][1000 genomes]
rs7120590	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs948017	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:93324200-93325200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:93324200-93325400	Enhancers	HepG2	liver
4	chr11:93324400-93324600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr11:93324400-93324600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:93324400-93324600	Enhancers	Small Intestine	intestine
7	chr11:93324400-93324600	Enhancers	Stomach Mucosa	stomach
8	chr11:93324400-93325000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:93324400-93325000	Enhancers	A549	lung
10	chr11:93324400-93325000	Enhancers	HSMM	muscle
11	chr11:93324400-93325000	Enhancers	NH-A	brain
12	chr11:93324400-93325200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:93324400-93325200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:93324400-93325200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:93324400-93325400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:93324400-93325400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:93324400-93325800	Enhancers	GM12878-XiMat	blood

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