Variant report

Variant	rs4753093
Chromosome Location	chr11:93337496-93337497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93331530..93334524-chr11:93337032..93340985,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10765617	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10831062	0.91[EUR][1000 genomes]
rs10831063	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831064	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831076	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831077	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831079	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020421	0.82[ASN][1000 genomes]
rs11020426	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11020427	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11020450	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020452	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020453	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020454	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11020455	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11606802	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12222957	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1939570	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1939571	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1939572	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1954783	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155247	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2399688	0.81[ASN][1000 genomes]
rs34679231	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4237559	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4753089	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4753094	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4753480	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67011570	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119935	0.89[EUR][1000 genomes]
rs7120590	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs948017	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4753093	FN5	cis	multi-tissue	Pritchard

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93336600-93337800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:93336600-93337800	Enhancers	Fetal Intestine Small	intestine
3	chr11:93336600-93338000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:93336600-93339600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:93336800-93337600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:93336800-93337800	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:93336800-93337800	Enhancers	Fetal Intestine Large	intestine
8	chr11:93337200-93337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:93337200-93337800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:93337200-93338600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:93337200-93339000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:93337400-93338400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:93337400-93338600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:93337400-93338800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:93337400-93338800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:93337400-93338800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:93337400-93339600	Enhancers	Monocytes-CD14+_RO01746	blood

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