Variant report

Variant	rs11020532
Chromosome Location	chr11:93575678-93575679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93574931..93577812-chr11:93581289..93582861,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10765635	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11020533	0.93[EUR][1000 genomes]
rs1150326	0.84[ASN][1000 genomes]
rs1298531	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16919444	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34057693	0.82[ASN][1000 genomes]
rs3763808	0.90[ASN][1000 genomes]
rs55734929	0.90[ASN][1000 genomes]
rs58063272	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs584084	0.90[CEU][hapmap];0.88[CHB][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58976781	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59726694	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs598495	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs601792	0.92[ASN][1000 genomes]
rs61498836	0.87[ASN][1000 genomes]
rs61904957	0.90[ASN][1000 genomes]
rs61906576	0.93[ASN][1000 genomes]
rs61906579	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs625359	0.94[EUR][1000 genomes]
rs625685	0.89[CEU][hapmap];0.88[CHB][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs626216	0.90[ASN][1000 genomes]
rs636482	0.92[ASN][1000 genomes]
rs654896	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs664257	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs66487029	0.88[ASN][1000 genomes]
rs66760087	0.90[ASN][1000 genomes]
rs66887806	0.93[ASN][1000 genomes]
rs669565	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs66963387	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67594435	0.88[ASN][1000 genomes]
rs677019	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs67734074	0.85[ASN][1000 genomes]
rs679241	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7103466	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7114611	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7115115	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119738	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7125525	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125919	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126745	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7129970	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924366	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7949505	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93566200-93577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:93570400-93579200	Enhancers	Stomach Mucosa	stomach
3	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93573200-93577000	Weak transcription	Placenta	Placenta
5	chr11:93574200-93577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:93574400-93576000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:93574800-93579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:93575000-93575800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:93575200-93576600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:93575400-93575800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:93575400-93575800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:93575400-93575800	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:93575400-93575800	Flanking Active TSS	Hela-S3	cervix
15	chr11:93575400-93575800	Enhancers	HSMMtube	muscle
16	chr11:93575400-93575800	Enhancers	Osteobl	bone
17	chr11:93575400-93576000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:93575400-93576200	Enhancers	NHEK	skin
19	chr11:93575600-93575800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:93575600-93575800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:93575600-93575800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:93575600-93575800	Enhancers	NHDF-Ad	bronchial
23	chr11:93575600-93576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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