Variant report

Variant	rs11020533
Chromosome Location	chr11:93575999-93576000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93574931..93577812-chr11:93581289..93582861,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10765635	0.91[EUR][1000 genomes]
rs11020532	0.93[EUR][1000 genomes]
rs16919444	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58063272	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs584084	0.91[EUR][1000 genomes]
rs58976781	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59726694	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs602703	0.91[ASN][1000 genomes]
rs61906579	0.95[EUR][1000 genomes]
rs625359	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs625685	0.93[EUR][1000 genomes]
rs628665	0.86[ASN][1000 genomes]
rs631261	0.87[ASN][1000 genomes]
rs634325	0.87[ASN][1000 genomes]
rs666074	0.89[ASN][1000 genomes]
rs66963387	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs687042	0.84[ASN][1000 genomes]
rs687507	0.91[ASN][1000 genomes]
rs7103466	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7114611	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7115115	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7119738	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7125525	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7125919	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7126745	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7129970	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7924366	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7949505	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93566200-93577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:93570400-93579200	Enhancers	Stomach Mucosa	stomach
3	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93573200-93577000	Weak transcription	Placenta	Placenta
5	chr11:93574200-93577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:93574400-93576000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:93574800-93579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:93575200-93576600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:93575400-93576000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:93575400-93576200	Enhancers	NHEK	skin
12	chr11:93575600-93576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:93575800-93576000	Enhancers	Hela-S3	cervix
14	chr11:93575800-93577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:93575800-93577200	Weak transcription	NHDF-Ad	bronchial
16	chr11:93575800-93578200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:93575800-93578200	Weak transcription	HSMMtube	muscle
18	chr11:93575800-93578400	Weak transcription	Osteobl	bone
19	chr11:93575800-93582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:93575800-93582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links