Variant report

Variant	rs634325
Chromosome Location	chr11:93564408-93564409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11020533	0.87[ASN][1000 genomes]
rs1298531	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs601792	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs602703	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs606087	0.83[ASN][1000 genomes]
rs61906576	1.00[EUR][1000 genomes]
rs625359	0.86[ASN][1000 genomes]
rs626216	0.83[EUR][1000 genomes]
rs628665	0.90[ASN][1000 genomes]
rs631261	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs636482	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs666074	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66887806	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs674886	0.81[ASN][1000 genomes]
rs676586	0.83[ASN][1000 genomes]
rs687042	0.88[ASN][1000 genomes]
rs687507	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7949505	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs634325	C11orf54	cis	Esophagus Mucosa	GTEx
rs634325	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93546400-93566200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:93554200-93567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:93562800-93565000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:93562800-93565400	Enhancers	Stomach Mucosa	stomach
5	chr11:93563600-93564600	Weak transcription	HepG2	liver
6	chr11:93563600-93564800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:93564400-93564800	Enhancers	Fetal Intestine Small	intestine
8	chr11:93564400-93564800	Enhancers	Pancreas	Pancrea
9	chr11:93564400-93565000	Enhancers	Gastric	stomach
10	chr11:93564400-93565400	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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